Team

How to cite

If MERFISHEYES helped your work, please cite the preprint:

Jenie I, Mishkin E, Smith E, Kenney M, Cao-Berg I, Maimon R, Ropelewski AJ, Cleveland DW, Bintu B. MERFISHEYES: Web-based Visualization and Sharing Platform for Single-cell and Single-molecule Spatial Transcriptomics. bioRxiv (2026). doi:10.64898/2026.09.20.753029. bioRxiv

@article{jenie2026merfisheyes,
  title   = {MERFISHEYES: Web-based Visualization and Sharing Platform
             for Single-cell and Single-molecule Spatial Transcriptomics},
  author  = {Jenie, Ignatius and Mishkin, Evan and Smith, Elvis and
             Kenney, Mariah and Cao-Berg, Ivan and Maimon, Roy and
             Ropelewski, Alexander J. and Cleveland, Don W. and Bintu, Bogdan},
  journal = {bioRxiv},
  year    = {2026},
  doi     = {10.64898/2026.09.20.753029},
}

Acknowledgements

• The Brain Image Library, whose datasets are on Explore.
• MERFISHEYES is open source under the MIT license, and built on open-source work: Next.js, Three.js, AnnData and Zarr readers, and the scverse SpatialData formats.

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